Data & Code
Open source infrastructure
All releases include documentation and version tags so collaborators can reproduce figures across publications.
biallelic_hr: HRD workflow & resources
Reproducible pipeline for identifying bi-allelic homologous recombination alterations, including precomputed LST/Sig3 scores and a TCGA Firehose snapshot.
bms038_analysis: CA209-038 immune dynamics
Analysis notebooks, processed data, and ioExplorer pointers for the CA209-038 nivolumab cohort—capturing clonal contraction, transcriptomic shifts, and TCR dynamics pre/post treatment.
BRCA-CN: Copy-number signatures in BRCA-altered cancer
Modular codebase and documentation for the BRCA copy-number (BRCA-CN) project, released under an open-source license with companion data availability.